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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Northern peatland microbial communities exhibit resistance to warming and acquire electron acceptors from soil organic matter
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. …
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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A universal language for finding mass spectrometry data patterns
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. Comparative … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… functions. It plays an important role in regulating microbial cellulose production and biofilm formation, which … Science Program (CSP) . The Impact Cyclic di-GMP controls microbial colonization, which can affect pathogenic and … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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