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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, … in studies of complex biological and environmental systems. We optimize our service to the community through responsibly …
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Microbial Genomics & Metagenomics (MGM) Workshop
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… becoming common images in many regions due to more extreme weather events such as heat waves, droughts and floods. The … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-UC Merced Interns Share Their 2021 Experiences
… the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … in professional development enrichment activities. For some students in the 2021 cohort, this was their first …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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