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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & … are doing and how they are evolving — and explained how his group uses metatranscriptomics and shotgun RNA sequencing to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million … how early plants transitioned from water to land. Key gene groups involved in stress tolerance and multicellularity … This work was funded by the US National Science Foundation (NSF) CAREER …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … features make CAM possible. So, she’s studying yuccas, a group of plants in the Agave family with fleshy, sword-like … their edges. KAROLINA : My work with the JGI focuses on a group of plants called yuccas. If you know Joshua Tree, …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've … sequences. Kyrpides heads the JGI’s Microbiome Data Science group, and Ivanova leads the Functional Annotation team. …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … , the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found … of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and archaeal genome sequences …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … rate of 0.9 grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team … collaboration brings tremendous strengths from each of the groups to allow us to do research that, frankly, neither one …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), … A record number of primary users — 2,475 — had active proposals with us, along with … Our primary objective is to serve our user community with …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to promote … importance of mentoring with Tanja Woyke and her research group – watch that video here . …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – … and the launching of a Secondary Metabolites research group (pages 47-49). “Our hope is to circulate this document …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, … codebase and legacy data resources and hardware, while also developing a modern and maintainable version of Phytozome, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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