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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts
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Interactions among triphenyltin degradation, phospholipid synthesis and membrane characteristics of Bacillus thuringiensis in the presence of d-malic acid
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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Help from Citrus’ Bitter, Hardier Cousin
… genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for … orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now disseminated around the … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included …
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