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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to over …
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Integrating Experimentation with Data
… $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … proposal process—enabling researchers worldwide to explore complex biological and environmental systems using advanced …
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … at once — rather than cultivating a single microorganism within a lab setting.  Roland Hatzenpichler is an associate … methane,” Hatzenpicher continued. “These [newly discovered cells] have very simple pathways. There are different ways …
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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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The Busy World of Deep Sea Eruptions
… underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire ecosystems. Hear … Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this …
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Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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