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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process … are partnering with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now … staff, Biosciences and Berkeley Lab leadership, the half-dozen JGI advisory committees and its primary funders at the …
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … at Duke University and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … for funding by JGI? A: The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, … health is outside of JGI’s mission. However, analysis of novel secondary metabolites from plants could be a good.  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … This work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … into more than 100 algal genomes, compare them, and visualize supporting experimental data. The Impact Algae are … analyze gene expression from published experiments; study DNA methylation, which gives clues to how an organism may …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)
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