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FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual …     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on …

A metagenomic look at the soil microbes present a year after … The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … a recovering soil microbiome provides a window into how to model and track the forest recovery process.  Summary Most …

Proposals aim to sequence and annotate genomes from Antarctica to … Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most abundant in the …

Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …

A tall native plant of the North American prairie, switchgrass …

Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … researchers came from two environments: natural forests and plantations managed through human intervention. By …

Maize produces a family of compounds that protects it against … revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … in addition to maize, including the bioenergy crop switchgrass. The team confirmed just how important zealexins are …

Meta-omics datasets show that CRISPR-Cas systems determine … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … harbored self-targeting CRISPR systems, metabolic modeling showed that  Ca . Huberiarchaeum would help fill in …

The United States  is the world’s leading soybean producer , and soybeans … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a … soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in …

Kaushal Sharma, one of five Antioch High School rising … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …

How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as …