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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … “The JGI DNA Synthesis Science Program has been instrumental in establishing larger-scale research projects in … the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to test …
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Viruses Reprogram Cells into Different Virocells
… infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … is known about the impacts of these infections on ecosystem functions. As part of efforts to characterize global … are transformed into virocells that are metabolically and functionally different from uninfected cells. Duhaime and …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Rex Malmstrom
… isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science … changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden drops in salt … how life thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt …
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Robert Bowers
… uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes … studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex … to analyze their structure. Scientists found both a gene likely important for sex determination and a shared genetic architecture with Y chromosomes in mammals: a …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint … genomes, they found a huge variety of CRISPR-Cas systems. Generally, prokaryotes use CRISPR-Cas systems to recognize … systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other systems exist. Investigating …
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