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Back in the Lab: the 2023 Summer Intern Experience
… fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots … researchers and robots have made these experiments easier for scientists everywhere. …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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“A STEM career is in reach and accessible”
Interns from Antioch High School. Though a partnership with Biotech Partners, a nonprofit that provides underserved youth in the Bay Area with personal, academic and professional development … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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Evolution of a Fungal Gene Expression Regulator
… the DNA bases themselves can also be modified. The best-known example of a modified DNA base is a methylation of the … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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iPHoP: A Matchmaker for Phages and their Hosts
… understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these …
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The Fungi That Survive In Antarctica
Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite … Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them better. …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, … in studies of complex biological and environmental systems. We optimize our service to the community through responsibly …
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Microbial Genomics & Metagenomics (MGM) Workshop
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the …
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