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JGI & KBase at PAG XXVII
… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … sequence information to BER-funded activities of plant systems that make use of these resources will present on …
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Axel Visel
Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … chromatin signatures reveal a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez …
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JGI Workshops at PAG
… sequence information to BER funded activities of plant systems. We will describe how to apply for a project with …
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Matthew Kellom
… and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January 19, 2021. …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism
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The Genome Sequence of Methanohalophilus mahii SLPT Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments
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A Collaboration to Improve Plant Genome Annotations Across Species
… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …
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Introducing New Members of the JGI User Executive Committee
… in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … ecological roles of microeukaryotes in terrestrial ecosystems. Additionally, Dr. Schulz is leading a DTRA-funded … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil …
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