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Gut Fungi: Unexpected Source of Novel Chemicals
… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … that these expressed genes translated into expected proteins. That work was done in collaboration with the …
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Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Ben Bowen
… spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral alignment, molecular …
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Introducing New Members of the JGI User Executive Committee
… User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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The Expanding Universe of Methane Metabolisms in Archaea
… Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … in 2018 on the discovery of miniature CRISPR-associated proteins that can target single-stranded DNA. Such proteins …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … of biodiversity, they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, … Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial isolate genomes …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the … & Bikash Shrestha Project: “ Detecting Isotope Bonds in Proteins. ” Yu Lu : ”I really enjoyed meeting and getting to … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal … sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …
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