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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Axel Visel
… initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, where … Award for Exceptional Achievement in Diversity 2014 LBNL Director’s Award for Exceptional Achievement 2009 … Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and genomes …
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What Happens Underground Influences Global Nutrient Cycles
… experiment in the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… and developing RNA barcoding systems to optimize microbial bioreactors. This genomic research creates new … Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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JGI User Executive Committee Expands
… genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on … at the University of Delaware. His lab is interested in how microbial communities can efficiently degrade complex …
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Mining Metagenomes for Cas Proteins
… characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Effects of sample treatments on genome recovery via single-cell genomics
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