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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial … is an allodiploid hybrid of two species, similar to a mule, but that is still able to reproduce asexually … optimized for industrial oil production. The organism uses specific chemical tags on DNA  to control which genes are …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this spatial transcriptomics …
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Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders
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Trent Northen
… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … is the Metabolomics Science Program Head at the JGI. Click to learn more about the program's areas of focus, major …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New Investigator call for … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … the data and work with the data. Q: How would you include a reference or citation in a proposal? A: If you’re presenting …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing … team be of help to us in research design and execution? A:  Human health is outside of JGI’s mission. However, analysis …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Genetic Elements and CRISPR Spacers in the Conifer Needle Microbiome Carlos Vazquez and mentor Bryce Foster, …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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