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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … over the decade that I worked with Dan to develop this specific procedure.” The rapport they built during this …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … to design more efficient microbial factories. Identifying specific genes, regulatory elements and metabolic pathways …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … (BGCs). BGCs make diverse molecules of value to both human and ecosystem health. But bacteria often fail to … strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … used for systemic orthology to enable use for both cacao functional biology and breeding.     …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration … attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … and the soybean sudden death pathogen. In the genes-to-function focus area, Daniel Kliebenstein from the University … avoid making the same mistakes,” he said. “Although in my specific case the projects are different for the two …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … developers at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up … team be of help to us in research design and execution? A:  Human health is outside of JGI’s mission. However, analysis …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … was similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … Learn more on the EPICON project … Plant Datasets … Also on Phytozome …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … to experimental manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, …
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