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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … developed for this purpose is “particularly applicable for non-model species for which fewer ‘marker’ genes are known … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … microbes and venomous hosts. She also facilitates the non-profit science communication and education organization …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the other calls, we …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and …   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … genome, these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and their complex … platform (http://southgreen.cirad.fr). For the portion of the work conducted by the Joint Genome Institute and the …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this approach would be greatly increased by having the … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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