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Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, … least a microgram of DNA in the tube so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … genera Angophora , Corymbia and Eucalyptus . The Impact The genus Corymbia is endemic to northern Australia but is … also thrive in areas that receive a lot of rain.  Previous analysis of the E. grandis reference genome, an …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … types, and analytical protocols that permit gene expression analysis across plants and add additional experimentally …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … support, how much help can users expect for data analysis of the different omics analysis? Are users expected …
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