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Calculating the Costs of Multiple Switchgrass Gene Copies
… (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … 8X variant come from? Did they arise multiple times or does their broad distribution indicate multiple, independent …
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Behind the Paper: Hot Springs Metagenomics
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar …
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Supercharging SIP in the Fungal Hyphosphere
… microbes who consume the labeled food or water. Later, their DNA can be tested for the isotope, which tells … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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iPHoP: A Matchmaker for Phages and their Hosts
… However, matching these viral genetic sequences to their hosts is crucial to understanding what these viruses … multiple predictions to reliably match viruses with their archaea and bacteria hosts. The Impact Within the … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … and ecosystem health. But bacteria often fail to express their BGC molecules in the lab. By engineering domesticated …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… maximize peatlands’ potential as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of … decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat bogs also serve the … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … biochemical pathways to break down plant material on their own, they likely cooperate with other microorganisms …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Webinar: Introducing the BioSANS capability
… (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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