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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional exploration.  The …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology …
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …
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Making a Lichen Together
… The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … hundreds of microalgae are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes … can rapidly create genetic variation in its progeny. The study’s transcriptomic data also identified many genes …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. Just as … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in … temperatures characteristic for polar oceans. In this study, they’ve cracked open the genome of another polar … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on … in more species, as well as modifying this method to study other types of problems surrounding differential …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … Filling in the Plant Tree of Life … Genome Insider …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle through resources including the JGI portals, and our broader data ecosystem. …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review …
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