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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … from individual environmental cells. The proof of principle study built off earlier approaches and offered a way for researchers to study the planet’s microbial diversity, much of which …
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Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
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Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria
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Decoding Yellowstone’s Microbial Mats
… cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial …
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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. In  their study , …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the … grass system for answers. Their work  recently appeared in  Nature Communication s. The team studied  Brachypodium … Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science …
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Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland
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Scaling Up Existing Skill Sets
… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, … in industry or academia. It was also a great opportunity to study and learn something totally new during my Ph.D. What …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to … survey of Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. …
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