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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex … interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… well as a recent discovery that turns scientific presumption on its head and opens up a new avenue to explore for efficient biofuel production. …
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Neha Varghese
… bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced analysis pipelines and tools as well as …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
… To understand how organisms adapt to extreme environments, Marike Palmer and Brian Hedlund study organisms …
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Kjiersten Fagnan
… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and … Informatics Officer provides advice and strategic direction for the overall design and implementation of …
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Exploring Phages at JGI
… As a first-generation college student, I never really entertained the possibility of working at a national laboratory. However, through the JGI-UC Merced … to new and different opportunities that could be available once I complete my PhD program. …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, … to identify variations of essential genes in metabolic networks that were missed using traditional approaches. This …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls University Tübingen (Germany), … in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley … let researchers around the world compare their work consistently. And EcoFABs also work well in the classroom. … visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … of a novel archaeum from a hot spring that has the genetic machinery to perform hydrogenotrophic methanogenesis … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically … 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming a …
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