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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… is a perennial grass that quickly grows in a variety of soils and water conditions, standing taller than basketball … For example, the current version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while … The team has received additional DOE funding to continue maintaining the gardens, which excites Juenger. “There will …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in coastal mangroves. The work … and temporal scales. Rambo also plans to work with JGI virus researchers and harness the IMG/VR database. “The … his project, Rambo aims to develop the omics methodologies into workflows with the DOE Systems Biology Knowledgebase …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … to successfully domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” … , the team used CRAGE to insert a fluorescent marker into  E. coli , allowing the team to model the competition …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … times independently during archaeal evolution or evolved into methanotrophy and short-chain alkane oxidation,” Borrel …
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JGI User Executive Committee Expands
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the …
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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global … Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… by the Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures GmbH, based in …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … impressive amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at … Data & Samples tab. Front their you can click on Data and into the Data Portal where if you click into a data product, you can read more and download the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… much damage to the hosts, but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the …
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Crysten Blaby-Haas
KE, Chan CX, Marriage TN, ... and Prochnik S. (2017) Insights into the red algae and eukaryotic evolution from the genome …
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