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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … from samples provided by more than 200 scientists and sequenced by the JGI through the  Community Science Program, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … types, and analytical protocols that permit gene expression analysis across plants and add additional experimentally … and visualize plots representing the GO and KEGG pathway enrichments. Detailed documentation about using this resource …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments showed …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … One review article in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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DAS Tool for Genome Reconstruction from Metagenomes
… and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … done by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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