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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens have flourished, so has the community of switchgrass researchers grown. After almost two …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating … the DOE’s Biological and Environmental Research user community in their bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … species; stricter filtering criteria provides a robust community dataset of improved quality; deep insights …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to push … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. … Grigoriev and Kuo recommend they apply through the JGI’s Community Science Program . …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … sustainable alternative fuels. Common Gardens Are A Community Effort The common gardens began nearly a decade …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … more than two copies of each chromosome, and more complex patterns of inheritance. The additional genes provided by … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … The JGI offers these solutions to the worldwide scientific community through its  User Programs on a competitive, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus …
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Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress
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