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… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …

… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied …

… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses growing …

A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … level, how does  Y. lipolytica work? The project was a multi-institutional effort led by then-graduate student Cory … an initial screen using an unvetted library (with both active and inactive sgRNAs) appeared to be rife with false …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in … properties, communities and ecosystems.” Building off multiple collaborations, Lab researchers working with the …

… (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … Lab). Supporting the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of genes that code … cell, from capturing and fixing carbon dioxide to generate multi-carbon compounds through a light-driven process. The …

… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …