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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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JGI on the 2020 Highly Cited Researchers List
… in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields … , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux …
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Rex Malmstrom
… that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why … — through the New Investigator call under our Community Science Program . Below find a list of researchers whose … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … joining the JGI, Dr. Yoshikuni was co-founder and chief science officer at a clean technology startup, Bio … sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the potential of …
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Jeremy Schmutz
… Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about … North Central College, Naperville, IL BS in Computer Science, North Central College, Naperville, IL …
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JGI announces final round of 2022 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a … deadline is July 31. You can learn more about our Community Science Program here .  …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s …
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