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Simon Roux
Coclet et al., 2023. Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed … prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to … networks in the model fungus  N. crassa , a team led by N. Louise Glass at the University of California, Berkeley …
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Genomic features of bacterial adaptation to plants
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Cultivating the Bacterial Microbiota of Populus Roots
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A catalog of the diversity and ubiquity of bacterial microcompartments
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Persistence and plasticity in bacterial gene regulation
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Atomic-Level Models of the Bacterial Carboxysome Shell
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Doubling Down on Known Protein Families
… a novel approach to better understand microbial communities by looking at protein function within them. The work was led … specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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Global Diversity and Biogeography of the Zostera marina Mycobiome
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JGI User Executive Committee Expands
On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that … in fungal genetics and evolution, he helps manage the Bacterial-Fungal Interactions Science Focus Area. He has … focuses on the interactions between seagrasses, considered marine flowering plants, and their microbiomes. She is …
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Ben Bowen
Exometabolite niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, … Google Scholar. … Education … Awards and Honors … Selected Publications …
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Measurement of bacterial replication rates in microbial communities
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