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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
In this short video, UC Merced undergraduate and graduate … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … on the internet and share our findings. And that was really important for me.  Tyrome Sweet : Most of the internships …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … business and will dearly miss seeing all of them on a daily basis.” In retirement Ray hopes to spend quality time with …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … from this review, I can say that a key area for the JGI’s evolution is in how we manage our data and how we can make …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is … students (and their mentors) how to begin establishing a professional presence through getting credit for any …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … production and natural fertilizers. By understanding the genetic and metabolic pathways involved in stress responses, …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … it’s difficult to link the connections to them from the genetic elements that scientists have found, e.g. plasmids …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … for tuning this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large …
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