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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, … as well as contributing to nutrient cycling in these ecosystems. Researchers studied P. psychrophila’ s stress … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals … aim to understand how soil microbiomes in fire-adapted ecosystems respond to low and high severity wildfire.  Eight of …
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Fungal Friends or Foes in Plant Roots
Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing … a European Research Council starting grant (MICRORULES 758003), the ‘Priority Programme: Deconstruction and … Control (CBC). The Austrian Science Fund FWF project P30460-B32 is acknowledged for funding L.A. … Arabidopsis …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to applications …
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Understanding Wildfire Recovery, Starting in Soil
… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the … Research and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was …
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Better Genome Editing for Bioenergy
… genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be … rife with false negatives: that time, the team only found 359 genes to be essential. The team also tested for genes … was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW were …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of topics related to structural biology, single cell and systems biology, omics, and big data science, machine … well as microbial ecology with a focus on metabolism and ecosystem health. To facilitate in-depth discussions on future … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Ray Turner Completes Last Tour of Lab Duty at JGI
Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell Drive, which was … Associate Director of Science; Todd Anderson, Biological Systems Science Division Director; and Ramana Madupu, BER …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… more active in fixing and metabolizing nitrogen, a key ecosystem nutrient. The Impact This study is the first to dig into a forest floor ecosystem to discover what carbon- and nitrogen-metabolizing … fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he also …
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