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Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their … their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
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The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … of explaining her research using the ten hundred most commonly used words in the English language. (Try it …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year …
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A Plantiful Future: Xiaohan Yang
Can plants help humans attain a renewable energy future? Can they help lock away more … Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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