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MGM Workshop at Fisabio Summer School 2025
… sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will … and seminars as well as practical hands-on sessions in bioinformatics and biostatistics Several sessions will be devoted …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich at the … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … consortium involving researchers from the University of California (UC), Berkeley, UC Agriculture and Natural Resources … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …
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MGM Workshop at Fisabio Summer School 2026
… Register here for the workshop The MGM Workshop is Module 4 of the Fisabio … sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will … and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. Several sessions will be …
Learn more
DAP-seq Drives Robust Mapping of Gene Regulation
… advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … TFs and fragmented genomic DNA, eliminating the need for living cells. This allowed researchers to map regulatory … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species …
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An Addiction Crucial to a Fungus’ Reproduction
… in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … the parasite first needs to secure its own transmission before working with the host. Using the mutualistic … reliant on the continued presence of the bacteria. By studying the Rm-Burkholderia symbiosis model, the team was …
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2025 NeLLi Symposium
… Immediately following the NeLLi Symposium, join us for a 1.5–day jamboree on November 6–7 focused on improving … genomics will work together to develop recommendations for cultivating new bacteria and archaea revealed by a … Atomic Testing Museum at the Desert Research Institute. Metagenomic and single-cell sequence data have provided a …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant root … the supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 years of … Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond …
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