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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their … difficult to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the …
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing … they turn carbon dioxide and water into oxygen and sugars. How photosynthesis works, though, is much harder to pin … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Promoting the Power of Viral Metagenomics
… . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by … which organisms the viruses may be targeting or infecting, how well the targeted organisms are at fending off the infection, and how long this evolutionary arms race has been going on.  …
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Adopt-A-Genome
… (JGI) and Matt Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani … Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Defining a Pan-Genome for Antarctic Archaea
… environments, and researchers are interested in learning how these microbes have learned to adapt from marine to hypersaline conditions by studying … offers insights into microbial evolution, as well as how Antarctic microbial communities contribute to global …
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Micro-Scale Applications Group
… that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure environmental microbiome activity …
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The Busy World of Deep Sea Eruptions
… researchers Anna-Louise Reysenbach, Emily St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.   …
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Training the Next Generation of Talent
… was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the … of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward compounds produced by the … the best to use,” he says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot and dry conditions could … and I kicked off our conversation with a quick recap of how plants, in general, work. KAROLINA:  We all know plants …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … you have to perform, the kind of tasks you’re given and how this is going. Tahirah Williams : I hope to gain … was just really, really exciting for me and learning how to use the capabilities of the supercomputers here to …
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Webinar: Introducing the BioSANS capability
… Molecular Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Biological … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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