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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … impact on global carbon cycling and climate is estimated to be larger than any other single plant genus. Peatlands … Early Career Research Program. Oak Ridge National Laboratory is managed by UT-Battelle, LLC for the U.S. Department …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … access and use to manage the information being generated across disciplines  These advanced computing capabilities …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging molecular biology and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with …
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” community to foster … be held on Nov. 18 in the Tilden room and open-air patio of the same building.  The symposium will include a mix of … providing an overview of the latest discoveries related to functional characterization of novel viral diversity, …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … metabolites and helping them identify and describe the functions of the biosynthetic gene clusters that produce …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It plays an important role in regulating … of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… at the conference venue This inaugural event will bring together researchers across major ecosystems and disciplines who are developing … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for …
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