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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Axel Visel
… where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … F, Afzal V, Ren B, Rubin EM, Pennacchio LA (2009). ChIP-seq accurately predicts tissue-specific activity of …
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Matt Blow
University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional … In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly conserved heart enhancers. Nat …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … characterizing the planet’s microbial diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into potential applications they may have in a wide range of …
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Orthophosphate uptake onto woodchips in denitrifying bioreactors is enhanced by anoxic-(anaerobic-)oxic cycling
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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