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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Understanding Wildfire Recovery, Starting in Soil
… process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … store carbon, filter water, and support all kinds of plants and animals, but with climate change driving more … process.  Summary Most studies on post-wildfire soil microbiomes have focused on marker gene analyses, which take …
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A One-Stop Shop for Analyzing Algal Genomes
… researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome … analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev encourage scientists to …
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii … ancient gene transfers from bacteria have all armed the plant with an array of defense mechanisms. The Impact There … will illuminate the evolutionary history of a pivotal plant as well as the evolution of seed plants, the fern’s …
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Integrating Experimentation with Data
… in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled …
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Genome Insider
… — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Dan Rokhsar
… in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … on understanding the origin, evolution, and diversity of plants and animals by combining computational genome … In addition to this evolutionary focus, his work on plant genomics is targeted towards the development of …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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A Sorghum Pangenome Opens More Doors to Discovery
… addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic … gene repertoire, and the phenotypic diversity across this plant in one accessible resource,” said John Lovell, a …
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DAS Tool for Genome Reconstruction from Metagenomes
… functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable computational … by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, Calif., and …
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The Case for Conservation
… The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are … genome references are now available for male and female plants of fire moss. Most notably, the work revealed that …
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