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Cataloging the Microbes that Manage the Health of River Systems
… of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements collected at … and reuse the data from the GROWdb for comparative analyses with their own data on the KBase platform, without having to …
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2022 Progress Report
… of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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Ian Blaby
… positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the …
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Nigel Mouncey
… a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a … 33 pending. Includes: Enhancing spinosyn production with oxygen binding proteins. (2014) U.S. Patent Application … 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213 …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic …
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Mateus Fiamenghi
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Better Genome Editing for Bioenergy
… of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … to fix a defect in the approach: CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the … cut, but these “single guide” RNAs (sgRNAs) can be faulty. Without a good sgRNA, Cas9 is ineffective and leaves the …
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Katherine Louie
… over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced … DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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Neha Varghese
… and implementation of microservices in conjunction with the IMG platform. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, … two cell types [of two different organisms] are interacting with each other, without all the noise or other biological …
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Triggering Morel Fruiting
… the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking … the key physiological factors that trigger forest mushrooms with diverse trophic modes to convert from vegetative …
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