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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… Over the last 40 years, summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and … yield and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Power of One, Amplified
… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of previously … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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Effects of Polar Light Cycle on Microbial Food Web
… scant, Ace Lake’s bacteria instead go through a boom and bust cycle aligned with light availability. A long-running … has been well-studied by many researchers for nearly five decades. In these frigid systems, where organisms higher up … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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JGIota: Sequencing Shiitakes with David Hibbett
… David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … But zealexins are almost completely limited to maize. By deciphering the zealexin synthesis pathway, this study makes … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. …
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can help … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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