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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the June dedication event of … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Dispatches From JGI Interns
… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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Help from Citrus’ Bitter, Hardier Cousin
… a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned … name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides these, he curated several small …
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JGI announces 2023 CSP Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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JGI announces second round of 2023 New Investigator awardees
That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two … 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, … across different kingdoms, with archaea having around 15, eubacteria around 25, and eukaryotes having slightly …
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