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JGI at the AGU Fall Meeting
User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe river” 8:30am Convention …
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Triggering Morel Fruiting
… assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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SIPs with Standards
Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … reusable, and more insightful, for the future of studying microbial communities.   …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community …
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Robert Bowers
Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the …
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Picking Up Threads of Cotton Genomics
All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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You Can Move, But You Can’t Hide
… in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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W. Berkeley Kauffman
… to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic engineering. …
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Finding the Fermenters
… also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the … National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture National …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth …
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