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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to study … environment and transfer that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through … on the synteny page. 7.  Q: What is the success rate for CSP? What makes a successful CSP? A: Reminder: two calls for …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … feedstocks. Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing … exist. During the course of evolution, algal organisms sprung up in almost all branches of eukaryotes (organisms …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … This study lends insights on how the fungus has responded to manmade changes in its ecological habitat, … The brown rot Serpula lacrymans is typically found in spruce and other conifers in boreal forests. As these trees …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing … actually started doing when starting the lab. It has been, especially from an early career perspective, been absolutely instrumental in a lot of the work … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. … a previous effort, an international consortium recommended specific guidelines and best practices for characterizing … grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one … use of modern, genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from … is crucial to understanding how these microbes respond and adapt to environmental changes. Summary … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley … we recently developed allow us to produce multi-monodispersed droplets in a two-dimensional plane by moving … manner. These advancements allow controlled sample transport for mass spectrometry applications, for example, or …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and … fixed carbon to the mycobiont. However, despite a century-and-a-half of lichen research, many of the … communication and cooperation. Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species …
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