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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … insights into how these fungi have adapted to stress and host specificity, particularly regarding the effects of …
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … Boehringer Ingelheim Fellow. Reviewer for major funding agencies and journals including National Institutes of … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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JGI Announces 2025 New Investigator Portfolio
Wisecaver, Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … fungi, the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of algae. They will …
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Tanja Woyke
… a gutless oligochaete for which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … User Programs … Education … Awards and Service … Selected Publications …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 … and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s mentor during her 2018 …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Frederik Schulz
Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the … 39, 499-509. Schulz et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature. 578 … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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