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2024 Progress Report
… and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Expanding Virophage Diversity
… of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new virophage …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of … cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus … raphanica and L boryana in the Americas. Tracing these phylogenetic relationships suggests that the shiitake … Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate … generative model  now available to the global research community able to not just analyze but also create DNA … to train GenomeOcean encompasses approximately 645.4 Gbp of high-quality contigs from diverse sources, derived from 219 …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Simon Roux
… users for analyzing viral datasets, and the organization of community-building efforts in the field of viral … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … and evolutionary drivers of virus-host dynamics in soil microbial communities. …
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The Integrated Microbial Genome Resource of Analysis
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A Comparison of Microbial Genome Web Portals
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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What Happens Underground Influences Global Nutrient Cycles
… Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in Chlamy, as the … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the … interact below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to … sex chromosome. Palindromes are large inverted repeats with highly similar sequences so that their sequences read the …
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