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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led to the identification of …
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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced … activity-based cell sorting pipelines to further the link between cellular phenotypes and genotypes. Pawlowska, who …
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine (www.intermine.org) … Education … Selected Publications … Awards and Service …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI … challenges , details how an interdisciplinary collaboration between three different principal investigators (PIs) … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental Molecular Sciences … available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … below. … … … … … … … … … … … … … … Blurring the Line Between Plasmids and Phages … Polymorphisms Created by … Single Cell Transcriptomes … Exploring and Visualizing P. hallii Mutant Library … Evaluation of Binning Tools for …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … is displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … found that the boundary, or biodiversity ‘break point,’ between these algal communities occurs in moderate waters …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome … Research Institute (TSRI) launches a collaborative effort between JGI, TSRI and the University of Minnesota to …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The … coordinates which go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his colleagues collected …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … . The team focused on the dominant bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … at the JGI as part of an education program developed between the two institutions to help train the next …
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