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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … range of habitats — from brine pockets and melt pools, and within the water column. They are also the primary producers … to analyze gene expression, to determine which genes are active under different conditions. This was facilitated in …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … wall degrading enzymes (PCWDEs), including carbohydrate-active enzymes, oxidoreductases, and cytochrome P450s. This … 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … both Meza and DOE JGI Director Eddy Rubin. “QSB faculty are active DOE JGI Community Science Program collaborators, and … on the genetic mechanisms of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … at once — rather than cultivating a single microorganism within a lab setting.  Roland Hatzenpichler is an associate … hot springs, an extreme environment with low genetic diversity that would help narrow down potential sources of …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … learns to recognize patterns, structures and relationships within the data — similar to the way LLMs learn grammar and … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the …
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The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
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Giant virus diversity and host interactions through global metagenomics
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Diversity and biogeography of SAR11 bacteria from the Arctic Ocean
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Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea
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Diversity, evolution, and classification of virophages uncovered through global metagenomics
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The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
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