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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a pipeline to first target … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group … and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, … BS in BioEngineering, University of California, Berkeley … Education …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery …
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, … JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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Chomping Toward Better Plastic Recycling
… We know all kinds of things about plastic – except, how to break it down for recycling. But some …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re … creating a lively zone called the rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, training 316 … Organismal Systems - Plant Biotic Interactions 2029168 award. This material is based upon work while SB was …
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