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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to … & Microbiomes (IMG/M) suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust … tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … and planktos for ‘wanderer’). But they vary across the global ocean. Phytoplankton communities in warmer waters, …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community … mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional efforts in … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than … clock independently provided timepoints of eelgrass’s major global colonization events. The U.S. Department of Energy … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon … minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … large-scale data, and professional expertise to support the global research community in studies of complex biological …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and analysis of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. …
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