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Integrating Experimentation with Data
… Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their joint meeting! … JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They provide the scientific community access to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint … for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral …
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JGI on the 2020 Highly Cited Researchers List
… in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields … tool to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  … for  M. sinensis can both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … Day on April 25. Since both DNA and the Earth are close to our JGI hearts, we’re featuring some scintillating genomic …
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DOE Metrics
… Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2026 Total   … Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective     …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the …
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JGI-KBase Panel at SACNAS
… scientific contribution they make, whether as part of a course or internship, and before ever publishing a research … of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and …
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Sequencing Submission Requirements for DNA Synthesis
… Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected … in oceans or soils.  A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … than they would gain by pursuing nutrients and other resources in the open oceans.  Other surprises in the research …
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