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Decoding Yellowstone’s Microbial Mats
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid … biomaterial manufacturing.  Summary Auxenochlorella UTEX 250-A provides an unprecedented foundation for metabolic … in green algae. The genome is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga …
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … US National Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. This work was supported in part by NIH grants DP2 OD008677 and R01 GM124589, NIH training grant T32 GM066698, and UC Berkeley …
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iPHoP: A Matchmaker for Phages and their Hosts
… to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of … Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to stress. The Impact Despite constituting less than 5% of land on Earth, peatlands store approximately one-third … peat from these boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the overwhelming …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy …
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When “The Blob” Made It Hotter Under the Water
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral … of the U.S. Department of Energy under Contract DE-AC02- 05CH11231, the G. Unger Vetlesen and Ambrose Monell …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Department of Energy operated under Contract No. DE-AC02-05CH11231. This research used resources of the National … Research Scientific Computing Center ( https://ror.org/05v3mvq14 ), a DOE Office of Science User Facility under …
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An Addiction Crucial to a Fungus’ Reproduction
… and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … The study shows that figure is likely closer to a mere 250,000 years — with many key colonization events in the … a variety of new environments.  This all started roughly 250,000 years ago, when eelgrass traveled across the ocean …
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Supercharging SIP in the Fungal Hyphosphere
… HT-SIP is a capability available to request through  the JGI proposal calls . … under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of … Department of Energy operated under Contract No. DE-AC02-05CH11231. …
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