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Decoding Yellowstone’s Microbial Mats
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an … biomaterial manufacturing.  Summary Auxenochlorella UTEX 250-A provides an unprecedented foundation for metabolic … and Environmental Research program under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and …
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based … databases for homologous YcgR proteins and chose a set of 92 proteins for functional characterization as candidate …
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iPHoP: A Matchmaker for Phages and their Hosts
… pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … Research Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of … User Facility, is supported under contract no. DE-AC02-05CH11231. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy … US Department of Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European …
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When “The Blob” Made It Hotter Under the Water
… such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two axes (LDA …
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An Addiction Crucial to a Fungus’ Reproduction
… and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of Nature Communications , the team found … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … from the China Scholarship Council to L.Y. (number 201704910807), by a fellowship to M.K. in the Helmholtz …
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Supercharging SIP in the Fungal Hyphosphere
… communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope … HT-SIP is a capability available to request through  the JGI proposal calls . … under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of …
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