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Axel Visel
Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at Lawrence Berkeley National Laboratory, he … EM, Ovcharenko I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the …
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Three Join the JGI User Executive Committee
… month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of … for the Ecological Society of America. He’s interested in how microbes influence biogeochemical cycles in soils and …
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Jeremy Schmutz
… involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome … novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. … JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. Schmutz provides scientific project management for …
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Learning to Look
… learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a … to avoid CRISPR-Cas immunity. In addition, Borges also showed that inoviruses might prevent new phages from …
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more broadly … for various data types or taxa An at-a-glance view of how much data you’ve selected for download, as well as …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a … (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … already doing what you want in a sense, and can inform on how this can be done” Roux said. And in just 6 years, IMG/VR …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub willow, researchers … response regulator that was expanded in a palindrome and shown to be undergoing gene conversion in willow. This gene …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The … successfully cultured two strains of Nanohaloarchaeota and showed they required cell-cell contact with the Antarctic …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the … genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within a single …
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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. As a result of the … launch a pilot project and begin the work of understanding how engineered environments contribute to greenhouse gases,” …
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Doubling Down on Known Protein Families
… exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When … to see beyond the beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, … organisms, but we still aren’t sure of their function.  However, if a gene in the community doesn’t match any of the …
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