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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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The Power of One, Amplified
… For example, they showed that the composition of the community was similar across sequencing approaches, that … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga … for developing ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an … of Energy (DOE) Biological and Environmental Research (BER) program to advance a fundamental understanding of genome …
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A Step Toward Controlling Soybean Rust
… percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Frederik Schulz
… and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Institute. The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference …
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Mapping Heat Resistance in Yeasts
… for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … had their DNA sequenced at the JGI as part of a 2014 Community Science Program project. The results revealed that …
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When “The Blob” Made It Hotter Under the Water
… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Lab), as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI …
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First Monoploid Reference Sequence of Sugarcane
… species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … BioEnergy Institute, support was provided by the Office of Science of the U.S. Department of Energy under Contract No. …
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